*,:before,:after{box-sizing:border-box;margin:0;padding:0}:root{--color-bg:#f8fafc;--color-surface:#fff;--color-border:#e2e8f0;--color-primary:#2563eb;--color-primary-hover:#1d4ed8;--color-success:#16a34a;--color-warning:#d97706;--color-error:#dc2626;--color-text:#1e293b;--color-text-muted:#64748b;--color-prophage:#ef4444;--color-contig:#cbd5e1;--radius:6px;--shadow:0 1px 3px 0 #0000001a, 0 1px 2px -1px #0000001a;font-family:-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Helvetica Neue,Arial,sans-serif}body{background:var(--color-bg);color:var(--color-text);min-height:100vh;line-height:1.6}#root{flex-direction:column;min-height:100vh;display:flex}.app-header{background:var(--color-surface);border-bottom:1px solid var(--color-border);box-shadow:var(--shadow);padding:1rem 2rem}.app-header h1{color:var(--color-primary);letter-spacing:-.02em;font-size:1.75rem;font-weight:700}.app-header .tagline{color:var(--color-text-muted);margin-top:.2rem;font-size:.9rem}.privacy-notice{border-radius:var(--radius);color:#1e40af;background:#eff6ff;border:1px solid #bfdbfe;margin-top:.75rem;padding:.6rem 1rem;font-size:.85rem}.app-main{flex:1;width:100%;max-width:1100px;margin:0 auto;padding:2rem 1rem}.app-footer{background:var(--color-surface);border-top:1px solid var(--color-border);text-align:center;color:var(--color-text-muted);padding:1rem 2rem;font-size:.8rem}.card{background:var(--color-surface);border:1px solid var(--color-border);border-radius:var(--radius);box-shadow:var(--shadow);margin-bottom:1.5rem;padding:1.5rem}.card h2{color:var(--color-text);margin-bottom:1rem;font-size:1.1rem;font-weight:600}.btn{border-radius:var(--radius);cursor:pointer;border:none;align-items:center;gap:.4rem;padding:.5rem 1.25rem;font-size:.9rem;font-weight:500;text-decoration:none;transition:background .15s;display:inline-flex}.btn:disabled{opacity:.5;cursor:not-allowed}.btn-primary{background:var(--color-primary);color:#fff}.btn-primary:hover:not(:disabled){background:var(--color-primary-hover)}.btn-secondary{background:var(--color-border);color:var(--color-text)}.btn-secondary:hover:not(:disabled){background:#cbd5e1}.btn-small{padding:.3rem .75rem;font-size:.8rem}.run-btn{padding:.75rem 2rem;font-size:1rem}.file-upload-area{border:2px dashed var(--color-border);border-radius:var(--radius);text-align:center;cursor:pointer;padding:2rem;transition:border-color .15s,background .15s}.file-upload-area:hover,.file-upload-area.dragover{border-color:var(--color-primary);background:#eff6ff}.file-upload-area input[type=file]{display:none}.file-info{border-radius:var(--radius);background:#f0fdf4;border:1px solid #bbf7d0;margin-top:1rem;padding:.75rem 1rem;font-size:.85rem}.file-warning{border-radius:var(--radius);color:var(--color-warning);background:#fffbeb;border:1px solid #fde68a;margin-top:.5rem;padding:.5rem .75rem;font-size:.8rem}.param-grid{grid-template-columns:repeat(auto-fit,minmax(220px,1fr));gap:1rem;display:grid}.param-field{flex-direction:column;gap:.3rem;display:flex}.param-field label{color:var(--color-text);font-size:.85rem;font-weight:500}.param-field .param-hint{color:var(--color-text-muted);font-size:.75rem}.param-field input,.param-field select{border:1px solid var(--color-border);border-radius:var(--radius);color:var(--color-text);background:#fff;padding:.45rem .75rem;font-size:.9rem}.param-field input.invalid{border-color:var(--color-error)}.param-actions{align-items:center;gap:.75rem;margin-top:1rem;display:flex}.status-badge{border-radius:999px;align-items:center;gap:.4rem;padding:.3rem .75rem;font-size:.8rem;font-weight:500;display:inline-flex}.status-idle{color:var(--color-text-muted);background:#f1f5f9}.status-loading{color:#2563eb;background:#eff6ff}.status-installing{color:#7c3aed;background:#f5f3ff}.status-running{color:#d97706;background:#fffbeb}.status-parsing{color:#15803d;background:#f0fdf4}.status-complete{color:var(--color-success);background:#f0fdf4}.status-error{color:var(--color-error);background:#fef2f2}.spinner{border:2px solid;border-top-color:#0000;border-radius:50%;width:14px;height:14px;animation:.6s linear infinite spin}@keyframes spin{to{transform:rotate(360deg)}}.status-messages{max-height:120px;color:var(--color-text-muted);border:1px solid var(--color-border);border-radius:var(--radius);background:#f8fafc;margin-top:.75rem;padding:.5rem;font-family:monospace;font-size:.8rem;overflow-y:auto}.status-messages p{margin:.1rem 0}.summary-grid{grid-template-columns:repeat(auto-fit,minmax(140px,1fr));gap:1rem;display:grid}.summary-stat{text-align:center;border-radius:var(--radius);border:1px solid var(--color-border);background:#f8fafc;padding:1rem}.summary-stat .stat-value{color:var(--color-primary);font-size:2rem;font-weight:700;display:block}.summary-stat .stat-label{color:var(--color-text-muted);margin-top:.2rem;font-size:.78rem}.table-wrapper{overflow-x:auto}table{border-collapse:collapse;width:100%;font-size:.85rem}th,td{text-align:left;border-bottom:1px solid var(--color-border);padding:.5rem .75rem}th{color:var(--color-text-muted);text-transform:uppercase;letter-spacing:.03em;background:#f8fafc;font-size:.8rem;font-weight:600}tr:hover td{background:#f8fafc}.no-results{text-align:center;color:var(--color-text-muted);padding:2rem;font-size:.9rem}.genome-track-container{overflow-x:auto}.genome-track-svg{font-family:inherit}.track-contig-label{fill:var(--color-text);font-size:11px}.track-contig-bar{fill:var(--color-contig);rx:3}.track-prophage{fill:var(--color-prophage);opacity:.8;rx:2}.downloads-list{flex-direction:column;gap:.5rem;display:flex}.download-item{border:1px solid var(--color-border);border-radius:var(--radius);background:#f8fafc;justify-content:space-between;align-items:center;padding:.6rem .75rem;font-size:.85rem;display:flex}.download-filename{color:var(--color-text);font-family:monospace}.download-size{color:var(--color-text-muted);margin-left:.5rem;font-size:.75rem}.downloads-actions{margin-top:1rem}.log-viewer{color:#e2e8f0;border-radius:var(--radius);white-space:pre-wrap;word-break:break-all;background:#0f172a;max-height:400px;padding:1rem;font-family:Courier New,Courier,monospace;font-size:.8rem;overflow-y:auto}.log-stdout{color:#a3e635}.log-stderr{color:#fb923c}.log-empty{color:#475569;font-style:italic}.log-header{justify-content:space-between;align-items:center;margin-bottom:.75rem;display:flex}.log-tabs{gap:.5rem;margin-bottom:.75rem;display:flex}.log-tab{border-radius:var(--radius);cursor:pointer;border:1px solid var(--color-border);color:var(--color-text-muted);background:#fff;padding:.3rem .75rem;font-size:.8rem}.log-tab.active{background:var(--color-primary);color:#fff;border-color:var(--color-primary)}.error-box{border-radius:var(--radius);color:var(--color-error);background:#fef2f2;border:1px solid #fecaca;padding:1rem 1.25rem}.error-box h3{margin-bottom:.4rem;font-size:.95rem;font-weight:600}.error-box pre{white-space:pre-wrap;word-break:break-all;color:#991b1b;margin-top:.5rem;font-size:.8rem}.input-section{grid-template-columns:1fr 1fr;gap:1.5rem;display:grid}@media (width<=768px){.input-section{grid-template-columns:1fr}.app-main{padding:1rem}}.section-toggle{cursor:pointer;color:var(--color-text-muted);background:0 0;border:none;margin-left:.5rem;font-size:1.1rem}
